#!/usr/bin/env python2.4 from __future__ import division import psyco_full import sys import ranges, sys from bx.align import maf from optparse import OptionParser import string table = string.maketrans( "#=X@", "-***") def main(): maf_reader = maf.Reader( sys.stdin ) maf_writer = maf.Writer( sys.stdout ) for m in maf_reader: for c in m.components: c.text = c.text.translate( table ) maf_writer.write( m ) maf_writer.close() if __name__ == "__main__": main()