##maf version=1 a score=0 s hg17.chr1 25070906 97 + 245522847 catctgtgtggccttgggcaagtgtcttcatctctcagc--ctcagcttcctTCAGGGcaatggttctcaaccctaggtgattttgtc-tcttaggggaa s mm5.chr4 20588749 87 - 154141344 TACTCGTGTGGCCTTGGGCA--------CACATCTCAACCGCCCAGTTTTCTCAAAGGCTCTGAATCT-----CTGGGCAACTTTGCCATCTGGAAGGGA a score=0 s hg17.chr1 36760670 83 + 245522847 CTCAGCAAAGCCGACAGCTGATGCGATTTATCTAGCTG-AGATCAGTTCATCAAATTTGGGAAGAGCTGAGCCGCTGGAAAGAC---------------- s mm5.chr4 29872117 100 - 154141344 CTCAGCAAAGCCGACAGCTGATGCGATTTATCTGACTGCGGATCAGTTCATCAAACTTGGGTAGGACTCAGCCGCTGGAAAGACTGGGGTGTGTGGGGGT a score=0 s hg17.chr1 36760753 95 + 245522847 GGGGGAAATCTGATACAACTGTGTCTGCTTAAAATGCAAAGGCTTGTGGAGATTTTGG-AACACTGTAAGGAGAGTCTC---AGTGAAGCCAG-GAGGAA s mm5.chr4 29872223 99 - 154141344 GGGGGAAGTCTGATACAATCGGGCCTGTTTAAAATGCAAAGGCTCA-GGAGATTTAGGAAATGCTGTAAGGAAAGGCTTTGGAGTGGTGGTGGTGGGGAG a score=0 s hg17.chr1 69184658 100 + 245522847 AAAGGTGCTGTCAATAATCTCAATTTTCTGAAAAGTCTAGGTGCGGCATTCTCAGGAGGACAGCTGGAACCTGCTAGCAAAATCTCACATCTGCCATTTT s mm5.chr16 70924474 99 + 98801893 AAGTGT-CTCTTGATTATCACAGCTGCCTGCAGCACTGAAATGGGTAATTCTCAGGAGGATGTCTGAAAGCCACTGGCAAGATTCCCTCTCTGCCATCTG a score=0 s hg17.chr1 83328898 89 + 245522847 TCC-----------CTACACTGCTGCTGTCCTCTTTTTGACATTTCTATTTATTTATTTTTCTGCCCTCTCAGATCAGCAGGAGAGCACCTAGGTCTCAG s mm5.chr3 12333788 97 - 160575607 CCCGACATTATTTTCTACACTGATG--AACCTCTTTCAGTGATTTGTCTTCATTTA-TTTTCTTCCCTTGCAAACCAGCAGGAGAAGACCTCCATCTCAA a score=0 s hg17.chr1 116007349 33 + 245522847 -------------------------------------------------------------------AGAAAAAAAGTGTGAAGGACTTAACTACTAGGA s mm5.chr3 58545037 100 - 160575607 TGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACTTTGGATACTGTGG a score=0 s hg17.chr1 119347855 98 + 245522847 CAAGTTTTACATTTAACATTTTATAACATGCTATTTTTCATTGATTATCCTAACACTAGAGTAAGTATCATATTCACT--GAAAAACCACTGAGTAATCT s mm5.chr3 61478065 91 - 160575607 GGTTATTTGCCTTTAACACTT---------CCTTTTTAAACTAAGCATCCTTGAACTACAGTTAATGTTATGTTCAACTAGCACGAATAGTCAGCAACCT a score=0 s hg17.chr1 119347966 75 + 245522847 TTTAAAGCCTAAAACATAAAAAAAATT---------ACATGCCATTTTTC----------------TAGTGTACTTCCATTGCTTGGtgtagtaggttga s mm5.chr3 61478169 86 - 160575607 TTCAGTGTCCAAAATGGAAGAAATATTTATATAACAACTGACCTTGTTTCTGGGTAAAAGTAAATATAGAGTACTTCCACTGCTT--------------A a score=0 s hg17.chr1 218584993 82 + 245522847 TAAGCAACTGCAGGATATGTTTAG--AAGCCAGTATACTA--CAACAGTGTCTGTCCTTGACTTCC--------------CTGGGTGTGTGTTTATATCT s mm5.chr1 11728768 99 - 195203927 GAAGCAACTGCTGGATG-GCTTAGATAAGGTAGCAAGCTCATCATCAGGCCTCATCCCCAGGTTCAGGGCAGCAAACATGCTGGGAGCATAGTCATAGCC a score=0 s hg17.chr1 218585114 95 + 245522847 CCTCTTGATCTTTTTTCACCACTG-----CTGCCTGGGTTGGAATGGCCAAGTTCTTGGAGGGAGGTGGGAGATGAAAGAGATGAAAGAAGCCCCTTAGA s mm5.chr1 11728905 91 - 195203927 CC------CCTGCTTTCA-CACTGTGTCACTGTCTGTGTTGGAATGACTCCATTTATGGAAGG-GGTAGAAGAAGAGAGAGAGGGAGGGAGCCTCCT-GA a score=0 s hg17.chr10 78410572 100 + 135413628 TGGGATATCCCTCCACAAATGCCTACTCACATTGAGTGGGTAGAGAGGTTAAGAGTTAACCACACAGGTCTTAAAGCCACATTGTTGGGTCTGAACCTAG s mm5.chr14 19681641 94 + 117079080 TGCTATGTCTC----CAATTGTCAGTTGATACTGTGTGGCAAGGAGGGT-AGGAGCTATGTAC-CAGGATTGGAAAGCACCCTACTGGCTTCAAACCTAC a score=0 s hg17.chr10 112926472 73 + 135413628 ctctcaccatgttacagatcaggagttcaggg----gctgcttgagcttaga-----gagttgataagtggttg------------------agggtgag s mm5.chr19 53494139 99 + 60688862 -TCTTTCTGCTTTAGTGAGTGGGAGCTGGGGGTTGTGCTGCTGGAGAGAAGATGGGCGGGCTGAGGCGTGATGGGCGGAGCTCAGGCCTGGTAGGCGGAG a score=0 s hg17.chr11 21370001 100 + 134452384 taaagctcagtttacctatgtgggatgctgatgtcaatgattttaggttcattcttttgaaccattcagatcttgtagggaagagtctttctgtttccta s mm5.chr7 38155635 68 + 133051633 TTAAACTCACTTT-TCTGTGTGGCATGGTGA----------------TTCA---------------CAGATTTTGCAAAGATTAATTGCCTATTACCCTG a score=0 s hg17.chr11 111799080 94 + 134452384 ggaggggctacacctgg------atggttctagtatctctgagggctacaataaggctgattccaggagtgtgaaaagaaactggaaaatggaactaact s mm5.chr9 73669606 93 - 124177049 AAAGCTGC-GTGCCTGAGCAGCTGTGGCCATGGTACCTTTGAG-----CCACCGGTGTGATTTGGGGAATGCGAAAAG-AGTTGAAAAGTGGAACTGGCT a score=0 s hg17.chr11 111799178 100 + 134452384 ctggaaccagctgcagctgcatgtgtgaggtactgttatgggggtgacactgaaaggaaatggaagtggacaggaaggagcgtgccttcttcttctaacc s mm5.chr9 73669703 94 - 124177049 CTGTAACCAGCTACTGGTTTCCCAG-GAGGT-TTCCTCCTGGGGTAACCATGAAAAGACCTGGAAAGGGACAGGAAGGATCTTGCCTTCTTCC----ACG a score=0 s hg17.chr12 42841966 99 + 132449811 TATGTGGTGAGAGAGGTAGTgaggtcagatatatatgttagt-tgaggcatctatggaacatcaaggtagaggagtatggtcagcaatcagatacagaaa s mm5.chr15 95320267 73 + 104138553 ---------------GTGGTGGGGTCATGC-TGTATGCTGGTACAAAGCATCTAAGAAATATCTGGGTA-----------TCAACACTTGGATGTAGAAG a score=0 s hg17.chr12 50927695 96 + 132449811 CTTCCTT---AGTCCTGGCTGGAGCCCCATTCAATCAGTCAACGATTCACGAATTATTTTGACATATATTAAGCAATGACT-TCTCCAGGCCTCATACTG s mm5.chr15 101894231 100 + 104138553 CCACCCTCAAAGTCCTGGCTGGGGCTGAAGTTAGTCAGTCAACAATTCATTAATTATTTCAGCACCTATTAAGTAATTGTTAATTCCAGGCCTCATGCTA a score=0 s hg17.chr12 50927792 96 + 132449811 ----GGATAAAAGTATCAATAGGCCACAGACACCTTTAGGATTTTATGATACGGTGAGGAAAGGCAGCCATCTACATAAATAACACatacagctaccatt s mm5.chr15 101894333 95 + 104138553 GGCTGGACACAGGAGTCTGCAGGCAACAGCCCATTCTGAGAGCTTCT-----GGTGAGGAAGGGCAGAACGGCTCGCAAACAATAAGCATGACAACTGTT a score=0 s hg17.chr13 18303690 98 + 114142980 TATA--TCTTAACAAAATTGTGTATGTTAGGCAGGTGGCATGCCAATGAAAGTAGTCTCCTATAGCTGCACTGAATCATTCTTCCCACCACTGAGAGTTG s mm5.chr14_random 1368908 99 + 14463169 TTTAAGCCATGGCAAAAGCTGGTATCATAGGTACTTGGCATGCCAGTAGAGGTTTTCTATGCAAGGGGCACTATATCATCCCT-GCACTGCTGAAAGCAG a score=0 s hg17.chr13 71993906 96 + 114142980 AGATGTGTGATGTGTGCAACAGACTTCTAAGAGAAAATACTGGCCTGGAGCTATACTTAAC----TTTCCCCATTCCATACCTCAAGCAAGTATTAAAAC s mm5.chr14 91069186 95 + 117079080 AGGTGC---ACTTGTGC-CCAGACATCTTAAAGCAAATACAGCCCT-GAGCTGTGCTTAACCAAGCTCCCCTTTTCTTTACCTGCAGCTGCTCTTGAAAC a score=0 s hg17.chr13 71994009 100 + 114142980 TTAGGTCTTCTGGATACGGCATGTGGGTTAGTGTTGTTCTGTGTTTTGATAAAAGTGAGTTCAATATTTCTTTATTAATTTTAATAGTATAACAAGAACG s mm5.chr14 91069288 86 + 117079080 TTAGGTCTCTTAGACACAGCCTTTGA--------------GCATTTAGATAAAAGTAAGTTCAGTATTATTTTATGAATTTTAACAGTATAACAAGGATG a score=0 s hg17.chr15 64888695 89 + 100338915 CCTTGGATAACCTCACCTGCCAGCAGCTGGTGGCA-----------TTTGTGTGAGCTGCTGGGTCTCCAGGCCATAGGCACCAACAACTTCCTATGCTT s mm5.chr9 60002616 98 - 124177049 CCCTGGCTGATCTTAAACAGC-GCGGCTGAGGGCCATAGCGAGGGTACTGTGTAAGCCA-TGAAGCTTTGGGTCATCGGCACCGCCAGTTCCCTGTGCTT a score=0 s hg17.chr15 64888904 100 + 100338915 CCTCGGGGTCCCAGAAAACCATGTGAGGAGCCTGCTGAAGCGGTGGCTGGACCTGCATTTGCATCAAGAGATCCCCATATCACTGCTCTTATTGTCCTGA s mm5.chr9 60002823 88 - 124177049 CACGCTGGTGCCACAGGGACAT------------CTGACGTACTGGCTAGCTGTTCACCCACACTGGGAGGTGCCCACAGTACTGTCCTTGCTGTCCTAA a score=0 s hg17.chr15 71618402 100 + 100338915 aaatacatttgtaattttgatattgccaaattgccctccgtaagcattgtaccaatttgcactcccaccagcaatgtgtgtgagtgccagtttcctcata s mm5.chr9 65301498 70 - 124177049 AAATACATTTG---------CATTGCCAAATTGTGCACCATAAGCACTGCGCTAATGTGTACTCT------------------ATGCC---TTCCCCACA a score=0 s hg17.chr15 94078159 100 + 100338915 CTCAGAAACCCCATGTCAACCTGTGACAAAGAGGTGTCACAGCACTGACATGATTGAGTTGGTATTTGGTGGTTTCACCTCAGAAACGAAGGGGTCCACA s mm5.chr7 75063795 90 - 133051633 CTCAGAAGTTCTG--------TGTGACAAAGAGCTGTCACAGCCTT--TGAGATGGAGGTTATATTGGGTGACTTCACCTCAGAAAGGAAGGGGTGCAGA a score=0 s hg17.chr15 97043815 72 + 100338915 TTTCTCTCCCTTTCTCTTTCTGTGGTTATAGGGATTCTTTAAGGGCAGGCAACATGTTCTTTGTTT----------------------CCAT------AG s mm5.chr7 55011621 80 + 133051633 -------CCATGTCTTCTGCT-------------TTCTTTAAAAGCATGGAAGATGTTCATTATTTATTATATTGATATTATTATTAATTATATATTAAG a score=0 s hg17.chr15 99357135 93 + 100338915 CTGTGCTCCTCCCTAAATTACTGTCACGCCCTTGTCTTTGTTCAGACCCTACCTGGCCAGAGAACTTAACTCTCTGAGTTTAGTTGTAGCTGA------- s mm5.chr7 79701832 92 - 133051633 CAGGG------TCTGAGTTACCGCTGTGCTGAT-TTTCTGGAGAGACATTAATTGGCTCTAGGACTGAAATATTTGAGTTTGGTT-TAACTGCAGTCTAT a score=0 s hg17.chr15 99357239 98 + 100338915 GTTGCAG-TTTTGTATCCATGTGCGTACATGTAATTGGGCTGGAATTTTAATGGCCCTTGCAAAGTAACTGGTTTTGACTCATAAAATGAAATGAGTC-C s mm5.chr7 79701937 100 - 133051633 ATAGCAGCTTTTACATCCATGAACACACATGCAATTGACCTGGAATTTTAATGGCTCTTACAGAATCCCTAGTTTTGACTCATAAAATGAAGCGAGCAGC a score=0 s hg17.chr15 99357347 100 + 100338915 AACCACTTACATAACATAGGAACTATTTGTTATTTGAAATATTTGACTGGGAAAAAATTATATTGAATTAGGAGACTTGGGGAGCTGATTCTCTATTTTC s mm5.chr7 79702047 98 - 133051633 -ATCATTTACACAACTCGGGGACTGTTTGTTCTTTGAACTTCTTACTTGAGAACAATTTATATTGAATTAGGA-ACTTGTGGGAATGGTTCTTTAGTTAT a score=0 s hg17.chr16 19539904 97 + 88827254 AGAGTGAGG--TAGATTTGTGTAATAACATGGAGAAGAGAGGGCC-ATCTAGATTCTCCATTAAAAAAGGCCATATTTAAATATCTCCAACCCAGTATTT s mm5.chr7 106081841 89 + 133051633 ATGATGGTGGCTGATTTTGCATGCCAACGTGGAAGCACGGTAGCTGGCCTTGACGCTTGAGTAGACAGG--------TA---ATTTGCAGTCAGACATGT a score=0 s hg17.chr17 2061273 100 + 78774742 CAAATTCTAATACATATATATATTTTTGCTTCAGAACATTTTTTGGGAGGTAAACATTTTTAACAATAGCAACATCATTACTGACTTGAAGGAAAATAAA s mm5.chr11 47018491 54 - 121648857 ---------------------------GCT-----------------AGGTAAGTATTTATAACATTAGCAGTATCACG--TGCTTTGAATGCCAATAAT a score=0 s hg17.chr17 10334038 96 + 78774742 tttcctaattttgtttagttgtctattt-tggttttcttgcttctcattgagc---ttctttaagattattatttgaattctttttcatgcagtttatag s mm5.chr11 54807819 100 - 121648857 TGTCCTGATTTTGTTTAGTTATACATTTCTGAATTTTAAATTTTTTATTTAATAAGATTTTTAAGACGATTATTTGAATCCTTTTTCAGAATGTTGATTG a score=0 s hg17.chr17 10334162 59 + 78774742 -----------------------------------------gagctttattagtttcatttggtggtgtcatgtttacatgatcctttgttatctgtgta s mm5.chr11 54807963 96 - 121648857 TTGTTATTATTATTATTATTATTATTATTATTATTATTATTATGCTTTACTTATTCCCTTTACTGGTGTTGCATTTGCCTGATC----ATTATCAGTGTA a score=0 s hg17.chr17 10334444 46 + 78774742 gttatgtcggga----------------atagtccaacaagtaag--------------------------------------gtagaaaatcagaaagg s mm5.chr11 54808369 100 - 121648857 GTTTTGAAGGGGTTCTATAAAGGCTCTTCTGAGCCACCAAGTAGTTAGTTCCCTAAGAATGCAGTGCCAGCATTGAAAAGAGCATAGAAGGCCTGGAACA a score=0 s hg17.chr18 48597070 96 + 76117153 GGATGACACTCGCTAGAGAGTTGCAACAGCCGATGCAGCTGTCCCCAGGCCCCAAACTC-ACTTATATTTCCTGAAACACCAGGAAA-AGCATCTTTT-- s mm5.chr18 18652413 93 - 91083707 TAATGATA--CAATGTAAATTCCCCATGGTCAAAACA-CTTTGTTCA---TCTCAATTCTACCTTTATTTTC-GCAATAGCAGAAAGAAACTCCATTCCA a score=0 s hg17.chr2 2258350 93 + 243018229 GGTACAAAAGAA----CCCAGTTGCCCGAATTCTAAATCAGTCATTGCCTTGTGAG---TTCTGCTTGTTTTCAGGTACCTCCTTTACATTCCTAATACA s mm5.chr12 90527164 100 - 115071072 GGTGACAAAGAAGTTGATCAGCTGCCCTCATCTGGATGTAGCTGTTGCTCTACCCGACATTCTGCAGGTTCTCAGTTAACACTTAGTGATTCCTAATAAA a score=0 s hg17.chr2 10219597 99 + 243018229 TGATGTTCAAACACCTGGTACACAAACCATCGGAGGAGAGAGTAAGAGAAATAATTATCAATGCTGTTCGGATAGAACAGGTAAAGTGGGTG-ATGAAAT s mm5.chr12 19672990 99 + 115071072 TGATGTTCAAGCACCTGGTACACAAGCCAGCAGAGCAGAGGGTCCGAGAGATAATCACCAACGCCGTTAGGATAGAGCAGGT-GAGTGACTGCGTGCAGG a score=0 s hg17.chr2 10219710 92 + 243018229 TGCTAGAAAATG-------CCTGTGCTTTAGTTGTATTCAGAAGCTGTAT-TTTGGTTCCTAGGAGTTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTG s mm5.chr12 19673102 100 + 115071072 TGCTGCGGGGCGGGGGTGTCCTCGGGCTTCGGGGTGCTCAGCGCCCCTTTGCTTGCCCTCTAGGAGTTCCTCACGGAGGCCTTGCCCGTGAAGCTCATCG a score=0 s hg17.chr2 10219817 79 + 243018229 TAATGAAGCAATACATTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTAAAGTATTGTTTACA--------------------- s mm5.chr12 19673217 100 + 115071072 TGATGAAGCAGTACATTGAGTTTGTGGCCGACAGGCTTATGCTGGAGCTGGGTTTTAACAAGGTAAAGTGTTATTTATGGCCTCCACCCTCTGCTGTCTG a score=0 s hg17.chr2 133931361 100 + 243018229 CAAAATATATGATCCCTGGCCAGCAAATTATTATGTTTTTAAAATTATACTAGCTGCCATACATATCAAGGATGGCTTTTCATGGGGCAAAACGGAATCA s mm5.chr1 126384113 49 + 195203927 ACAGATATATG------GACAGATAAATAAGTA-------AAAGTTATAAGAATT---------------------------------AAAACAG----- a score=0 s hg17.chr2 135657399 98 + 243018229 tctgagtccagaaagtttgagaattgct--CTTAGACAAAAAGGTATAAACAAGTGCCTGTTGTCAGATACACTttctttttctcaatgggtaaactctt s mm5.chr1 127722442 95 + 195203927 TCCTAGGACCAAAAAGTCAAGAATCACTGGGCCAGACAAAAAGATATGAATTTGCAAATCTTATCAGATAGATTTCATG----TCA-GAGGTGAACCCCT a score=0 s hg17.chr2 158501803 92 + 243018229 AGGCCCCATTTTCCTTTAGGAAGAC--------TTGAAAAACATCAACATTTGCCAAAGGAAGAGGAAATTTTTATTAGAACCAAACTTTCCCATTCAAA s mm5.chr2 58470298 97 + 181686250 ---CTCCCTTTTCCTTTAGGAACACCAGAAAAATGAAAAAACACCAACGTTTGCCAGAGGAAGCGGAAATTTCTATGAGAATCAAACTTTCCCATTCTGA a score=0 s hg17.chr2 158501908 97 + 243018229 CAAAACACTGAAGAACTTAC---TGCCTTCAGAAAACAGCGCCTTTTTTTTTAACCTCAAGGAACATTTTGCCAAGAAAACCTTCACGTAAATAAATCTA s mm5.chr2 58470403 98 + 181686250 CAAAGCACC--AGACCCTACACTCCCCCTCAGAAAACAGCTCCCTGGTTTTTAACCTCAAGGAAAGCTTTGCCAAGAGAGTTCTTGTGTAAATAAATCCC a score=0 s hg17.chr2 220169716 84 + 243018229 GGAGCCCCACCTAGATTTTATTGATCTCACTGcagtcctgccacgtcaggctgtacatgttgtgcactgcacaattctacttat---------------- s mm5.chr1 75864038 78 + 195203927 ------CCACCTAGACT---TTGATCTCACTGCAT-------------GGCTATACAAAGTGTATACTGCATGGTTCTCCTTATAATATAATATAATATA a score=0 s hg17.chr2 228546338 97 + 243018229 AAAGAAATCAGACCCCAGTTAGGATGAGATTTTCCCTGGCTTTGTGCCCTGCTAGATAATAG---AAATTCTTTTTTTATCATTCCTGTAATGTTGCACA s mm5.chr1 83670402 100 + 195203927 AATGAAATCAGACCCCAGCAAGGCTAAGATTTCCCCTGACTTCAAGCCCAGGTAGATAATATATCAAATGCTTCTATTATCCTCCCTGTAACACCACACA a score=0 s hg17.chr2 228546436 99 + 243018229 -TTTTTACTCATTGTATCCCTGAAAAAGATATGGCCAGTTGTCTGACTGCCACAGAGATCATCAATTGTTAAGGGATAGGGAAATGACATTTCATGATTt s mm5.chr1 83670503 92 + 195203927 GTTTTTACTCTAGATGTCCCTGGAAAAGACATGACTAGACACCACATTGCCA---AATCCAACTGTCTTCTAGGTA-----GCCTGGTATCCTATGATTT a score=0 s hg17.chr2 228546543 87 + 243018229 tactttacaaggtggtttacacctatttcttgggataattcttctagctacagataaacat-----------tttacacatggagtactgaggctt--gg s mm5.chr1 83670603 95 + 195203927 TACTATACTAG-TGGTTTGCATGTTTTTTCCTTAAT--TTCTTCCAGGAATAGACATTTATTTGTTTATTTATTTTCACATG--ATAGGAAGGCTCAGAG a score=0 s hg17.chr2 228546635 100 + 243018229 agaaggtcagtaaattgtccacattctcatagggattaggtagcagagtaggaattggaactcccaccattctgatcctaACACTTCTTTTTTTTTTTTT s mm5.chr1 83670703 72 + 195203927 TGAA-ATCA-CAAATTGTCCACATTCTTATA--GATTCAGGAACAAAAGATGGGTTCAAGTTCCCATT------------------------TTTTTTTT a score=0 s hg17.chr2 236224088 100 + 243018229 GTATTATAATTACTGTTGTATAGGAAGAAGCATGTCAGATAATTAGGAACTGGGTGGCATTTTATGCTAAGGATCAAAACAAAGATTTTGCTTGGAATGT s mm5.chr1 89394905 90 + 195203927 -----GTAATTAACACCGTCT----AGAGGCGTGTTAGGTGATTAGGAACTGGGTGGCA-TTTGTGCTAAGGATTAAAAAAAAAGTTTTGCTTGGAAAGT a score=0 s hg17.chr2 241218589 100 + 243018229 CATTACCTCAATGGAGTGGGAGCATGATGGTTCAAGTAGCAGGCTTTGGAGCAGAaaacccacctcaaccatcctccaaccgtaaagggtgatgatgatt s mm5.chr1 92838729 83 + 195203927 CCTGAGCTCAGTAGAGT-TGAGCGTGAAATATGAGACCAGAGACTTTGGA--ATAACACCCACCTCCAGTACCATCTAG--------------GGAAGCA a score=0 s hg17.chr2 241218689 98 + 243018229 catgaaacagtccaggaggaggagggacttcaggttttgtttgattcatttcagtggccc--aacagtggcatcaaggaccttggctctcccatctcctc s mm5.chr1 92838812 82 + 195203927 CATGGAGAAATCTTGGAATCAGA-----TTCCAAGTCTGGTTGA-----TTCAGTGGTCCCAAACTCTGCCGAC--------TGTTCCTCTCAGTCCCCC a score=0 s hg17.chr2 241218789 98 + 243018229 ctttcacccaaggctggcttcCCCTTATGGCCATGAGAGA--ACAGAGGAGCCTTCCAAAGTGCTCTCTCCTTCATGGGTTATTAGACACCAAGCTCATT s mm5.chr1 92838896 91 + 195203927 CTTTTACCCAAAGTTGGCTT-CCATGCTGGCCACTGGATACGACAGAAAGGGCTTTCAAACCCCTC-CTCATTC-----CCATTAG--CTCAATCCCATT a score=0 s hg17.chr20 1258879 97 + 62435964 TTGACGC--TGTACACACTCAGGGT-GTGTCAGTATCTGGGCTGCTTCCTGGGCCAGGCAGGCCTACGTCACAGTTCCCATGACCCACCTGGCAGAGTTG s mm5.chr2 30052102 95 - 181686250 ATGACACAGTGTGCCCACTCAAGGTGGGGTAGGTATCAGGGATGCT-----GGCCAGGCAGGCTCACAGCACAGTCCCCATGATGAGCCTGGTCAGATTG a score=0 s hg17.chr22 22911777 100 + 49554710 tccagggctttggagacacaggtgatgagagagctgggggggtcaaacaggagccgatgaggtaccagcaggatcctaagacccaccttgggcagaaggg s mm5.chr10 55128750 97 - 130633972 TGCATGGGCTTGGAAACAGGGGT--TGGGAGACCCAAGAGAGG-AAATAGGGGCCCGTAAAGCACTCGCAGGGTCCTACCATCAACTCTAGACAGACAGA a score=0 s hg17.chr22 22911884 88 + 49554710 aggaaggaatgtgctatgggagcca----ggcccagat-cccatggaagcgggcgtcacgcaggcctgtggg----ccaag---gggagtcacagaggtg s mm5.chr10 55128855 100 - 130633972 AAGGAGATATGCACTCTTGGATTGATGGGGGCCCAGGAACCCACAGAAACCAGAACGGTGAGGTCATGTAGGTATACCCAGTCCGAGAGTCACAGAAGTA a score=0 s hg17.chr22 22911974 94 + 49554710 agcccagctgcaggtccc--ctgctggctagagtagggaagc-ccggcttctctgtgccccctgccctccagcctccca---ctaggtctcctgttggct s mm5.chr10 55128957 97 - 130633972 TGTGTGACAGCAGAGTCTGGCTACTGA--AGCAGAGGAAAGTACCTGCTTTTCT-TCTCACAGACCTGGGAACTTGACAAATCAGGGCTTCTCGCTGGCT a score=0 s hg17.chr3 48560577 92 + 199505740 tagggggACAGCCAGAGTGGAACAGCTGGCAG--------ACTCTCCCCACAAACACTATGGATTCAGGCAGGACGGACTTCAAATTCAAACCCTGAGTG s mm5.chr9 15170646 93 - 124177049 CTCAGG---AGCCCCAGGGAAACCGCTGGCAGCTGGGGATACCGACACCACAAACACTAC--ATCCCCACACGCTACTCCTCTAATTCAGA--CTGAATG a score=0 s hg17.chr3 53293986 82 + 199505740 GGAGGTACACAATGAAGAAGAGCTTCTGCCTTAAAGGAACAAGGCTGTCTGGGA-GGCCTGAGAG-----------------TCCATTAAAAGACACCGC s mm5.chr14 90516191 79 - 117079080 AGAGGTA-ACAAC--------------------AGGGAACAAGGCAGCCTGAGAGGGACTGGGGGATCAGCTGGGGTGTTCACCCATTCAAAGACATAAT a score=0 s hg17.chr3 124550656 100 + 199505740 GCTGCCCACCTGGATGTCTTGCCACCACCACCCTGACATCACACCCAAACCACACTCGCTTTCCCACATTGTCATTCCCCAATCACTTTTCTTTCAATTT s mm5.chr16 63708193 70 - 98801893 AATGCCCAC--------TTCACCCCCACTGGGATGACATTACACCC----------------CCCATAAGGCTCCCCCTCTGCCTCCTGCT------TTC a score=0 s hg17.chr3 124550759 100 + 199505740 TGCCTTTGCCTGGGACAGCCCCATTCTGCTGCACCAGTGCCAACATCCTGCCCACGTAAGTGGCTTTTGCTTTTCAGATCTTTCCCTCTGACACTCATTC s mm5.chr16 63708266 81 - 98801893 TGCCTTCACAGAGGACACCTCCATCCTCCTGCCTCTGT----AGAAACTGCTTACG--------------TTTCTAGAACTTT-CCTCTGGTATTTATTC a score=0 s hg17.chr3 124550860 92 + 199505740 TTTCCCCTCAGCCGCAGG-----ACCT---GTCCAGCACTGACGAAGTCCTGCTCATCTGGAAACAGCTCTCACACTTGTCCTTTCTGTTCTGTGCCTTC s mm5.chr16 63708348 86 - 98801893 CTTCCTCTTGGCCCCAGGCCAAACCCTAGGGTTCAGCGCTG--------------AGCTAGGAAGAGCTCTTCAGTGTGTCCTTTCCCCTCTGTATCCTG a score=0 s hg17.chr3 124550953 98 + 199505740 TCCACTGCCCACATGCAGTTCTCGCCTGGCTCTTGGATTCTGGTCGCGACACCCTGGACCGACAGCCTCCCTCT--GCCCTCCCTGACGCCTGCACAGCC s mm5.chr16 63708435 99 - 98801893 TCCACTGCGTCCATGACTTGCGCACCTGTCTCTGGGATACATGCAGTGCCACTCCGGCTC-ATAGTTTTCCTTTCAGCCCTCCCTGCTGCCTGTATGGCT a score=0 s hg17.chr3 141632732 100 + 199505740 GGTATAGGGAACCATTGTCTTGAAGTTATAACGTGTTCAAAAATAAACCCAGGCTTGAAGACTGTCCATCTTTCAGATACTACTTGCCTGAAACTAAAGT s mm5.chr9 26774947 80 - 124177049 GTCCCAGTAGCTCATTA--------------------AAAAAACAAACCTATGCTTGTAGACTGCCTGTCTCTCAGCTATTGTCTCCCTAAACCAAAAGT a score=0 s hg17.chr3 141632837 100 + 199505740 CTGATTATCTCATGGGCCAGAGAAACACAAAGTGGGCCTGAGACTTGGGTGTCAAGCTTCAAACCCAAAGATGCCGGGCCCAGGTGTGGCTCCTTACACC s mm5.chr9 26775032 98 - 124177049 CAGGTTATCTCACAGGCCAGAG-GACAC-AAGTGAACCTAGAACTTTGATAGTAAGCTTCAAATACAAAGATGCTAACCTTTAGTATGGCCCCTTATCAT a score=0 s hg17.chr3 145759625 99 + 199505740 TTTCCTCTCCCA-CTCCCATCCAACTTTGATATTCTGTTATTCTCTCCTGCTAGTAAATTACTCTTAGACAAAAAACACACTCATATATGCACAAACACT s mm5.chr9 30356615 78 - 124177049 -CCCCTCTCCTAGATTCCTTGTAAGCTCAA--------TATTCTTTCCTGCTTCACAAT---TCTTGGACCAA----------ATTGCTGAGCCAACACA a score=0 s hg17.chr4 30104530 100 + 191411218 TTCAAAATAGTCTCCATTTATTTGTCAGGGTTTCAATGAATAACGTCTCCTGGTTGTAATTTCAACATCATCAGACATAAAACCTGTGAGGGATTGAAGA s mm5.chr5 55998705 99 + 149219885 AACAAAATACCCTTCATATTTTTGACATTGATTCTGTGAAT-GCTTCCCCTAACTATAGCTTTAAAAGGATGAAATGTAAAACCTGTGTGGTGTCACAAA a score=0 s hg17.chr5 7482337 97 + 180857866 aattagtacctcaggaggagctaacagtttcaaatac-ctgtgcccctagtaagagaaattcagaatacatgatgtaaaaatccatgttt--actcagag s mm5.chr13 51062598 100 - 116458020 AATCATCTTATCATGGGGACCAAAGAGTTTCAAGCTCACAGCAGCCCAGTGAAGAGAGATTCAAAACACATGCTTTCAACATCCATAATTCCATTCAGAG a score=0 s hg17.chr5 50161116 100 + 180857866 CAGGACGCTTTGTTTATACACTAACATATAAATCCTAATCAGAATGCGTTACTGTGTCTTTCGGACCAAGTTTAGTTTCTGAAATTTTAGATCCATTAAA s mm5.chr13 2630525 90 - 116458020 -------CTGTGTTCATATTACAACTTGT-AGTGTTCCTGAGGATGCTTCTCCAGGCTCTTCAG--TGAGTCCCTCTTTTAGAATTTTAGATTCATTAGG a score=0 s hg17.chr5 50161234 83 + 180857866 ACTTTATAATAAATGATTGTCTTTATTAATGGTAGGATGGAAAACATTTATCAAGAATATTTTTCCTCTAGATACCATTTTTC----------------- s mm5.chr13 2630633 90 - 116458020 CCTTTGTGACTAGTGACTCTTTTTATTACTAGTCAAGTGGAGAACATTCTTT--GTCTCTTTTTCCTCT--------TTTTTCCCCCCTTTATCAACTCA a score=0 s hg17.chr5 50161334 96 + 180857866 GTACTGTTTTCAAATTAGACCTTGGAATAGAAGCTCTGTCATTTTTTTGTAAGACTGAATGTTCTGACATGAAACTGATTG----CTTTGTCAAATATTA s mm5.chr13 2630740 97 - 116458020 GTGCTCTTCTTATATTTGACC-CAGCCTAAGTGTTCTCTCA--TTTGAGTTACACCTAATGTTCCAACATGAAACCGACTGCCCTCTTTGTATGATGCTA a score=0 s hg17.chr5 59729049 79 + 180857866 agga-------aatcatgtcatgtgcaacaac--------attactgaatctggaggac------atcatattaagtgaaataagccaagcacagaaaaa s mm5.chr13 11071962 95 - 116458020 AAGAAAGGGTGAATTATACCATTTGTAGCAATGAGGTAGGATTAC---ACCCAGTTGTCTACACTATTAAGTCAAGTGAAATAAGCCAGG--CAGAAAGA a score=0 s hg17.chr5 59729161 88 + 180857866 gaaaattttaaaa-------gtcaaacctacaaaagcagagagtagaatggtgtttactgggggctag-----ggacagagagttgtaagtgggagagat s mm5.chr13 11072085 92 - 116458020 GGAA--TACAAAAGAAAAATGTCAAAATCATCGGAAGAGAGAATAGAATGACGGTAACAAAAGCCTAGACTCTGGAGAGTGAGT--TAAAGAGGAG---- a score=0 s hg17.chr5 107713422 87 + 180857866 ggttccaggaaagcagattttttaaaagtgcatg--ttcattttttatgttatcctccaaatgaactttagcctttcctt-accatatga---------- s mm5.chr17 61821911 74 + 93559791 TATATCAGGAAAAC-----------AAGGACATGAATTCA---------------TCTACCTAAGCTTTAGTCTCTCCTTCACAATATAAGCAAAAAGTC a score=0 s hg17.chr5 124258310 97 + 180857866 CATTGCCAGCTTCTTTGGCG---CCTACCCAATGTTGGTTAACActcagagagccttacttggccactctacataaagtaaaccctcactttggctcttt s mm5.chr18 55625368 94 + 91083707 CATTG-CGGTTTTTTTGGGGTGCTCTGCCCA--GACGGTTTCCTCTCAGAG-GCTTTTGTTGGCCCCTCTGTGTAAGGTTAATGCCGACTTTTG--TTGT a score=0 s hg17.chr5 124258418 100 + 180857866 ctctgtattcttttttttcagccttaagtgcattctaaaactctcattcattttgtaacttgttctctgtctcctctaccataatttaaactctttttgt s mm5.chr18 55625473 93 + 91083707 ACCTATCTGTTCTTCTCTGAGC-------ACATTCTGAGGCCCTTATTTATCTTCACTTTTCTTCTCTGTCTCCTCCACTATGACATAAACTGTATTTCT a score=0 s hg17.chr5 166647136 97 + 180857866 GCCAGCCAGC-AAAAGTGATG-GGGGCCCAGAGTCAGACCTTGTCCAGTTACCCCAGCTGGCCC-ATTCAAGTATCAAATGCAAGAACCTGCCATCTCCC s mm5.chr11 85026687 88 - 121648857 GCCGTCCGATAAAAAATGATGTGGGGTCCAGGGTCCTACCTTATCTGGGTTCCCAAGCTGGCCCTGCTGAAGGATCGAACAAGAGAAC------------ a score=0 s hg17.chr5 167790705 80 + 180857866 CAGATTCCTCAC--------------------TTCTACAAACTCTCATCCACTGTTGTTTGCTTAGGGATTTCAGCAGCTGTTTAGTCCAACATTTTAGC s mm5.chr11 86100371 87 - 121648857 TAGAGCCCTTGCTGCATCCCCCACATAAGACGTTCTGCACTCTCTCCTTCCCAGCTGCCTCCCTGGGGATCTCTG-------------TAATAGGTCAGC a score=0 s hg17.chr6 30178410 100 + 170975699 TGGTGAGATCATTTCAACACCCGAAGATGAGACCATCTCTTCCTTGTCCATTTCCCGTGGCCCCTAATTCCCATGTCTAAGACAAGAATTGAGTCTAGTA s mm5.chr17 58121194 58 - 93559791 TGG-----------------CTCAAGATGGGTGCATC----------------------GCCTCTCATCTCTG-GTCATAAACATGAATGGAGGCTTG-- a score=0 s hg17.chr6 82459523 94 + 170975699 CCATTTTGCA------TATACTTCAGGAACCATTTATGCAGGAGCCATTTATGGATGCTTTTCTCCAGAAATCTTAAGTTTTCTCTTAGTACAACAGCTG s mm5.chr9 85672301 97 + 124177049 TCATTTTGCATCAACCTGTACTTGAACAACCACTTATAAACGAACCATGTAATGAGTCTCTTCCACAGAAATCCTAACCTTTCTACTAGCACAACA---A a score=0 s hg17.chr6 111038718 100 + 170975699 GTTGCATGTCTTATTTTCCAACTATTTTTTTCTTTTCTTTTACCTTTAGCAGAGAAAACAGCATCATTTTAGAGGCATAGAGAACAAGTAGCAGTTGCTT s mm5.chr10 90275074 65 - 130633972 GCTTCAAGCCCTACTCTCCCA------------------TTCCTTTTAGCAGAGCAG--AGCATCATCTTAGAGGCA-AGAGAACG-------------- a score=0 s hg17.chr6 111038850 95 + 170975699 -----GTCATCCCTTTCCATTCTTAAGAGTCCATTATGTTCGTAAGAGCAAAAGAGTAGTGCAGAAGGCCAAAATTCTAAGTACTAAAGTTTCAAAACCA s mm5.chr10 90275167 81 - 130633972 AAGAGGCCATTCCTTCCCATCATGAAGC----------TCCGTTACAG---------AGTGCAAAATGTCAGAGCTCCAAGTCCTAAGGTTTCAAAAGCA a score=0 s hg17.chr7 47362590 99 + 158628139 TCCATCTGTCCATCCGGTTCAGAGGGATCCCCCTGCCTAGAACACAGCTAAGGATTTGCTG-AATGAATGAATGATACTCCTGATGGGCCCTGGCACACA s mm5.chr11 8532790 98 + 121648857 TTCTGTGGTGCAGGGAAGTCACCAGGACTCCATCCATTAGAACAGGGTT-AGGGTGTGCAGCAAGGAACAAATGGTACTACTGAT-GGTCCTGACACGGA a score=0 s hg17.chr7 68309359 65 + 158628139 ----------------------------------cactggtgcctgactgataAACATACAATGATAATCCATCAGCTTCTCCCCCCACC-AGTGTGTCA s mm5.chr5 18818764 96 - 149219885 CCAACATACACACACACACACATACACACACACACACTGGTCTCTAATGGATAGACAC----TGATGATACACCCCCTTCTTTCTGCACCTCACATCCTA a score=0 s hg17.chr7 102923612 100 + 158628139 TCTGGAATTCTTTGCTATCCACACAATGAACTAGGGTAATAAAGAGAAAAAGATTAGCAGGTGCAGGCACAGCAATCAGAGTGGGAAGATTTCTTAAAAA s mm5.chr5 20475150 86 + 149219885 TCTAGAGTTTTAGGCAATT--------------GGGTAATAAATAGCAAAACACCATCAGGTGCAGGTAAGGCGATTGGAATGCGAAGGTTTCTTAAAAA a score=0 s hg17.chr7 102923728 100 + 158628139 AGTATCTATCTCATAGTGATCTGCGTTTAATCTGTAGGTCAATTCCAGAGTTGACAGAAGCCAGTGATTTATGCCTTTGCAAGCTGAGGGTAACCACGAT s mm5.chr5 20475253 100 + 149219885 AGCACTTCTGTCCCAGTGACCTGCTTTTAATATGTAGGCCAGTTCCAGCTTTGACACAAACCAGTGATTTATGCCTTTGCAAACTCAGCGGAACCAAGCT a score=0 s hg17.chr7 110103065 92 + 158628139 CTATATAAATAGTTTCTTCAGCTTTTACTTGGTCATACGCAA--------CAGAAACTGTAATTATTTGTTCCCAGAGTTCAGGAAAATCAACCAGGTAG s mm5.chr12 78265518 96 - 115071072 TAGTATAAATAGTCT-TTCAGTTTTGACTTGCTCATATCTAAAAGTGATGCAGAGTCAG--ATT-TCTGTCCTCAGATTTGAGGAAAAGCATATGATCAG a score=0 s hg17.chr7 110103164 100 + 158628139 TTCAGGTGGGGCTATTGAAACTTTCTAATAAAATAAAACACATATTTAATTAACACACTCTTTCATTTCTACCATCCAATTTCTAATTAAAAATCTGATT s mm5.chr12 78265621 95 - 115071072 CAAAGATAAGGCTATTGAAATTTTCTACT----TAGAGTA-ATACAAAATTACCATAATCTTTCTATTCTCCCTTCAGTATCCTAATTAAAAATCTGATT a score=0 s hg17.chr7 110103278 23 + 158628139 -------TATTTGAAA----ATCATC------------------------------------------------------------TGAAACTA------ s mm5.chr12 78266930 100 - 115071072 ACGTGAATGTTAGAAAGGAGATTATCAGGGAAGAAGAGGAGTGGACAGAGGAAGGAAAGAAATAATAGAGGGTGGGTGGGGGTTAGAGAAACCAGAATAC a score=0 s hg17.chr7 132398404 99 + 158628139 CAAGCCACAAAAAGGAAAACCCATGTTAGGCTCGTGTTTATAAGGTCTGAGCATTCC-TAACATGTACCGGGTACCTGCTAGCTCCTTTCATGTTTCCAT s mm5.chr6 33139207 99 + 149721531 CAAGCTTCACAAAGGGAAACCCATTTTAGGGTTGTGTTTATAAAGTCCGAGTATTCCGGAAAGGGTCCTTGGTGCTTGCTAGCT-CGTTCTTGTTGCCTT a score=0 s hg17.chr7 148319065 100 + 158628139 tattatttaaccatcctgagccttagtttccttatctataggatagggataataatacctgtgtctcagaggtgttaaggctcaaggggaaacctatgta s mm5.chr6 47779563 69 + 149721531 TATTATTTTACCTTCTGAAAGGTAAATT---TTGTGTATAAG------------------GCATCTCAGAGGTATTAGAGCTTAA----AAACC------ a score=0 s hg17.chr8 13000361 100 + 146274826 CATCTGGGCCACAGACTGGCAGTTAATCTGTAGTGATACAGAGTTGAGGCTTGGCCGATGTGAGCTCTGGAAACTGTGCCATCTCAGTCGGTGCCTGCGA s mm5.chr8 35556436 100 + 128688707 CATCTGGGCCACAGACTGGCAGTTAATCTGCAGTGACACGGAGTTGAGGCTCGGCCGGTGGGAGCTCTGGAAGCTGTGCCACCTCAGTCTGTGCCTGCAA a score=0 s hg17.chr8 35554852 100 + 146274826 ggaaaatcctgtagtacaccactttgatcaagtaatcaatgttaatgtcaccgaaaatgggtcaaatcaacagcatgtgatttgatgtgatatcctgatg s mm5.chr8 100989286 78 - 128688707 GGAAAATGTGATCATACTCTACTTC-AGCAAATAA-------TAACATCACCAGTTATAGGAC-AGTCA-----ATGAGATC--------TCTCCTCATA a score=0 s hg17.chr9 4785783 100 + 138429268 tttatttagaaagtgtttattgagccacagtatgtgcaaggctttgtatgggggtgagtgtaatatatgtgagaagctggttgcccctgttctcatggag s mm5.chr19 28402133 86 + 60688862 ---ATTCAGAA---GTTTATTGAGCCTCATATTGTGCAAGGCTTTG--AGGAGGGGAGTCTA------GGTAGACGTTGGTTGCATTTGCACTCCGGGAA a score=0 s hg17.chr9 90347903 98 + 138429268 ATTTATTTCCATTTA-GTATTAATAATCATTCATACAGCTAATATGATAAC-TTTTCTCTAGTATTATATAGTTTGCCATATTTTACATTAATTTTTTAC s mm5.chr13 51470522 97 + 116458020 ATTTCTTCCTGCCTCTATGCTAACAATCGTTTACACAGCTGGTGAGAAAATGTGCTCTGTGGTTCTGCTTAGCTTGCTGTGTTTT--GTTACTCCCCTA- a score=0 s hg17.chr9 115208914 97 + 138429268 ATCACAAATTCATTCTGACTGAACCCTTTTTTGC--TTTAAATCAGAGGAGCGGT-AATTTCTAGTTTGAAAGTGACAGACACATGTGGATGGTATCCTT s mm5.chr4 62641149 80 + 154141344 -------------------TGAAGCTTTTTTTGTGATTTAAATCACAAGACTAATCACTTTCTAGGTTGAGCATATCAAAAATATA-GAATGAATACATG a score=0 s hg17.chrX 28416956 94 + 154824264 GGAGCAATGAGTGATTTAGAGTTTGTAATTCAGTTGAGAAGAAA-----TTTCAGAATTGTATAAAAGGCAGTG-TGCTTATATATTCATTCATTAGTCC s mm5.chrX 81022099 96 - 160634946 AGAGCAATGAATGATTCAGAGTTTGTAATTCAGCTGAGAAAAAGAAAACCCTCAGTATTGTATAAAAGGCATTATTGCTTATA----CATTCGTTAGTCC a score=0 s hg17.chrX 29561041 100 + 154824264 ATAGGAAGTAGAAAGTGGTTTTACGGGAGGCTATGAAATGATCCAAAAGGCAACTCTGGCTGTAGAGCAGAGTCCTGATTAGAGGAGGGAACAAATGAAG s mm5.chrX 82158373 87 - 160634946 GTAGAAAGAAGTCAATGTTTTTAGGCAAGGGTGTGAAG-------------AGCCCTGCCTACAGCACCTGGCTTTGATTATCAGAAAGAATATGAGAAG a score=0 s hg17.chrX 29561155 99 + 154824264 AGGAGGCTTTAGGAATTGGCCAGCGGGAGAGGCTGTGAGTAAGAACGAAAGTGATTGGCAATGGGAAGGAATCAGAAGA-TAAATAACTGAAAGATATTA s mm5.chrX 82158473 86 - 160634946 GGAAGGCTTTAAGGACTGGTAATGTGCAGACG----GAGAAATTACAA------TGGACAATTGGA-GAAATCAGAAAAGTATATATATGCA---TATTG a score=0 s hg17.chrX 29561273 100 + 154824264 GATTGGATGTGGGCACTCAGAGGATGAGATGAGTTGGAGGTCGGTAGTCTGGGAAAAAGTGAAGAAATCATGCCAAAATCAAAATCATAATGTCTAGAAA s mm5.chrX 82158563 65 - 160634946 ATGTGTGTATAGGTTATCAGAAG--GAGCTAGGCTGCAA--------------AAATTGTGAAGAAATCATGTCTGGGTCA------------------- a score=0 s hg17.chrX 147242398 100 + 154824264 tatgagaaatgcaagagtatattttgacatgtgagcataaaattcagggaagggccagggctggaaatataacattggtagtcatcagcctagatgtagg s mm5.chrX 60884000 88 + 160634946 TTTGAGAAATTCTAGAGCAGACTTTCATGTGTGTGCATAGAATTAAGGAGATGGTCAGAGCTGGACATAAAATGCTGTATATCATCA------------G