#!/usr/bin/env python2.4 """ Convert one mapping from columns to atoms (AAA 4) and a second mapping from atoms to a smaller set (4 2) and write a mapping from columns to the smaller set (AAA 2). """ import sys atom_mapping = dict() for line in open( sys.argv[2] ): fields = line.split() atom_mapping[ fields[0] ] = fields[1] for line in open( sys.argv[1] ): fields = line.split() print fields[0], atom_mapping[ fields[1] ]